Title: PanFunPro
Type Software Lukjancenko, Oksana, Thomsen, Martin Christen, Voldby Larsen, Mette , Ussery, David Wayne (2013): PanFunPro. Zenodo. Software. https://zenodo.org/record/7583
Links
- Item record in Zenodo
- Digital object URL
Summary
PanFunPro stands for PAN-genome analysis based on FUNctional PROfiles. PanFunPro is a tool for
pan-genome analysis. It has several following functionalities – (1) homology detection and genome
functional characterization by three HMM-collections, (2) pan-/core genome calculation within the
set of proteomes, (3) pairwise pan-/core-genome analysis, (4) specific genome calculation for different
subsets of genomes as well as pairwise analysis of specific proteomes, (5) basic statistics for
the output genes from the pan-/core-/specific-genome calculation, (6) analysis of available GO
information for the output genes from the pan-/core-/specific-genome calculation.
PanFunPro is provided in two parts: PanFunPro2profiles.pl and PanFunPro2apply.pl
More information
- DOI: 10.5281/zenodo.7583
Subjects
- Pan-genome analysis
Dates
- Publication date: 2013
- Issued: November 27, 2013
Notes
Other: Please be aware that this code is not being actively developed, as it is an archive of the code as it was at the time of publication in the associated F1000Research article. For the latest version of this code, please see http://www.cbs.dtu.dk/~oksana/PhD_Thesis/PanFunPro/.Rights
- https://opensource.org/licenses/GPL-3.0 GNU General Public License v3.0 only
- info:eu-repo/semantics/openAccess Open Access
Format
electronic resource
Relateditems
| Description | Item type | Relationship | Uri |
|---|---|---|---|
| IsCitedBy | https://doi.org/10.12688/f1000research.2-265.v1 | ||
| IsPartOf | https://zenodo.org/communities/f1000research | ||
| IsPartOf | https://zenodo.org/communities/zenodo |