Title: immunomind/immunarch: Immunarch 0.8.0

Type Software Maria Samokhina, ivan-immunomind, Aleksandr Popov, Vadim I. Nazarov, immunarch.bot, Eugene Rumynskiy, gracecodeadventures, tsvvas, Maksym Zarodniuk (2022): immunomind/immunarch: Immunarch 0.8.0. Zenodo. Software. https://zenodo.org/record/7221366

Authors: Maria Samokhina ; ivan-immunomind ; Aleksandr Popov (Immunomind) ; Vadim I. Nazarov (ImmunoMind) ; immunarch.bot ; Eugene Rumynskiy (Immunomind) ; gracecodeadventures ; tsvvas ; Maksym Zarodniuk ;

Links

• Item record in Zenodo
• Digital object URL

Summary

BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR1-3 regions are needed Bugfixes and performance improvements in BCR pipeline Removed arguments .align_j_gene from repGermline() and .verbose_output from repAlignLineage() that are not needed anymore seqDist() and seqCluster() now support auto-trimming of extra information from gene columns for proper cluster naming New .trim_genes argument for seqDist() that allows to disable auto-trimming (useful if used columns are not ones with genes) Improved clustering in seqCluster() Removed some false warning that appeared on vis() calls

More information

• DOI: 10.5281/zenodo.7221366

Dates

• Publication date: 2022
• Issued: October 18, 2022

Rights

• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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