Title: Mappability of the mouse and human genomes and methylomes with Umap and Bismap

Type Dataset Karimzadeh, Mehran, Ernst, Carl, Kundaje, Anshul, Hoffman, Michael M. (2016): Mappability of the mouse and human genomes and methylomes with Umap and Bismap. Zenodo. Dataset. https://zenodo.org/record/60940

Authors: Karimzadeh, Mehran (Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada) ; Ernst, Carl (Department of Human Genetics, McGill University, Montreal, Quebec, Canada) ; Kundaje, Anshul (Department of Computer Science, Stanford University, Stanford, California, USA) ; Hoffman, Michael M. (Princess Margaret Cancer Centre, Toronto, Ontario, Canada) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

This dataset consists of single-read mappability (bigBed files) and multi-read mappability (bigWig files) of human and mouse genomes and methylomes (bisulfite-converted genome). We provide mappability information for the two most recent assemblies  each organism, and for four different read lengths (24 bp, 36 bp, 50 bp, and 100 bp). The human genomes and methylomes have an additional read length of 122 bp.

More information

• DOI: 10.5281/zenodo.60940

Subjects

• Umap, Bismap, mappability, bisulfite sequencing

Dates

• Publication date: 2016
• Issued: December 20, 2016

Notes

Rights

• https://opensource.org/licenses/GPL-3.0 GNU General Public License v3.0 only
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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