Title: Molecular architecture of the yeast Mediator complex

Type Dataset Robinson, Philip J, Trnka, Michael J, Pellarin, Riccardo, Greenberg, Charles H, Bushnell, David A, Davis, Ralph, Burlingame, Alma L, Sali, Andrej, Kornberg, Roger D (2015): Molecular architecture of the yeast Mediator complex. Zenodo. Dataset. https://zenodo.org/record/60814

Authors: Robinson, Philip J (Department of Structural Biology, Stanford University School of Medicine, Stanford, United States) ; Trnka, Michael J (Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, United States) ; Pellarin, Riccardo (Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, United States; Structural Bioinformatics Unit, Paris, France) ; Greenberg, Charles H (Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, United States) ; Bushnell, David A (Department of Structural Biology, Stanford University School of Medicine, Stanford, United States) ; Davis, Ralph (Department of Structural Biology, Stanford University School of Medicine, Stanford, United States) ; Burlingame, Alma L (Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, United States) ; Sali, Andrej (Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, California Institute for Quantitative Biosciences, University of California, San Francisco, San Francisco, United States) ; Kornberg, Roger D (Department of Structural Biology, Stanford University School of Medicine, Stanford, United States) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

The 21-subunit Mediator complex transduces regulatory information from enhancers to promoters, and performs an essential role in the initiation of transcription in all eukaryotes. This repository contains files used in the 3-D modeling of the entire Mediator complex, using an integrative modeling approach that combines information from chemical cross-linking and mass spectrometry; X-ray crystallography; homology modeling; and cryo-electron microscopy.

The approach is validated by the use of X-ray crystal structures as internal controls and by consistency with previous results from electron microscopy and yeast two-hybrid screens. The model shows the locations and orientations of all Mediator subunits, as well as subunit interfaces and some secondary structural elements. Segments of 20–40 amino acid residues are placed with an average precision of 20 Å. The model reveals roles of individual subunits in the organization of the complex.

More information

• DOI: 10.5281/zenodo.60814

Subjects

• Integrative Modeling Platform (IMP), Chemical crosslinks, PMI, X-ray crystallography

Dates

• Publication date: 2015
• Issued: September 24, 2015

Rights

• https://opensource.org/licenses/LGPL-2.1 GNU Lesser General Public License v2.1 only
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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