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Title: COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modelling.

Type Software Raimundez, Elba, Dudkin, Erika, Vanhoefer, Jakob, Alamoudi, Emad, Merkt, Simon, Fuhrmann, Lara, Bai, Fan, Hasenauer, Jan (2020): COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modelling.. Zenodo. Software. https://zenodo.org/record/3757227

Authors: Raimundez, Elba (University of Bonn, Technische Universität München) ; Dudkin, Erika (University of Bonn) ; Vanhoefer, Jakob (University of Bonn) ; Alamoudi, Emad (University of Bonn) ; Merkt, Simon (University of Bonn) ; Fuhrmann, Lara (University of Bonn) ; Bai, Fan (University of Bonn) ; Hasenauer, Jan (University of Bonn, Technische Universität München, Helmholtz Zentrum München) ;

Links

Summary

This repository contains the code, models and data used in "COVID-19 outbreak in Wuhan demonstrates the limitations of publicly available case numbers for epidemiological modelling".

The models are available in the PEtab format, as well as the corresponding format for the used tools.

The version of the toolboxes here correspond to the following commits of their respective github sites:

d2d 7c91539c8474f2af1e95b7fe7bc7b0431c08827a in https://github.com/Data2Dynamics/d2d PESTO 8278a1a74839e5ca87fe3220efab4cd42385ad05 in https://github.com/ICB-DCM/PESTO AMICI 9a91295d50703a24d40934dd2f2e715572e3773d in https://github.com/ICB-DCM/AMICI/tree/master/matlab

More information

  • DOI: 10.5281/zenodo.3757227

Dates

  • Publication date: 2020
  • Issued: April 19, 2020

Rights


Much of the data past this point we don't have good examples of yet. Please share in #rdi slack if you have good examples for anything that appears below. Thanks!

Format

electronic resource

Relateditems

DescriptionItem typeRelationshipUri
Citeshttps://github.com/Data2Dynamics/d2d
Citeshttps://github.com/ICB-DCM/PESTO
Citeshttps://github.com/ICB-DCM/AMICI/tree/master/matlab
IsVersionOfhttps://doi.org/10.5281/zenodo.3757226
IsPartOfhttps://zenodo.org/communities/covid-19
IsPartOfhttps://zenodo.org/communities/zenodo