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Title: Immunarch: An R Package for Painless Analysis of Large-Scale Immune Repertoire Data

Type Software ImmunoMind Team (2019): Immunarch: An R Package for Painless Analysis of Large-Scale Immune Repertoire Data. Zenodo. Software. https://zenodo.org/record/3383240

Author: ImmunoMind Team (ImmunoMind) ;

Links

Summary

immunarch 0.4.1 Features

feat(diversity): aded a column choice for repDiversity

Bug fixes

fix(clonality): fix docs in repDiversity, prepare to CRAN check fix(diversity): fix docs in repDiversity, prepare to CRAN check fix(diversity): fix R check from repDiversity fix(gene-usage): add a comment for a future fix, make it work with data.tables properly fix(io): fix a bug when .compress=F doesn't work in repSave if .format = "immunarch" fix(package): fix CRAN NOTE about dtplyr fix(package): change version to 0.4.0.9000 and fix the description for the CRAN release fix(public-repertoire): fix .coding doesn't work fix(tests): fix clonality tests fix(tests): fix spectratyping tests fix(tests): fix overlap tests fix(tests): remove unnecessary print() from spectratype testing fix(vignette): fix spectratype in the vignette

Minor updates

Continuous integration process improved. We are heading towards improvements in code and commit organization in the repository. Some parts were refactored: explore, inst, io, kmers, overlap, package, public-repertoire, shiny, spectratype, tests. Improved tests for: clonality, diversity, dynamics, explore, gene-usage, kmers, overlap, public-repertoire. Docs: general improvements, fixed typos.

More information

  • DOI: 10.5281/zenodo.3383240

Dates

  • Publication date: 2019
  • Issued: September 01, 2019

Rights

  • info:eu-repo/semantics/openAccess Open Access

Much of the data past this point we don't have good examples of yet. Please share in #rdi slack if you have good examples for anything that appears below. Thanks!

Format

electronic resource

Relateditems

DescriptionItem typeRelationshipUri
IsSupplementTohttps://github.com/immunomind/immunarch/tree/0.4.1
IsVersionOfhttps://doi.org/10.5281/zenodo.3367200
IsPartOfhttps://zenodo.org/communities/covid-19
IsPartOfhttps://zenodo.org/communities/zenodo