Title: AnnoTree: Functionally Annotated Tree of Life

Type Dataset Mendler, Kerrin, Doxey, Andrew, Chen, Han (2018): AnnoTree: Functionally Annotated Tree of Life. Zenodo. Dataset. https://zenodo.org/record/2555457

Authors: Mendler, Kerrin (University of Waterloo) ; Doxey, Andrew (University of Waterloo) ; Chen, Han (University of Waterloo) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

Current version: 2019-02-01: This file is a MySQL (v5.7) dump for AnnoTree, a functionally annotated tree of life. It includes the databases 'gtdb_bacteria_RS86' and 'gtdb_archaea_RS86'. Both databases include Pfam (v27), KEGG Ontology (from the UniRef100 database downloaded March 6, 2018), and TIGRFAM (v15) annotations for the representative genomes in GTDB release 03-RS86.

Please refer to http://annotree.uwaterloo.ca for the full site.

Older versions: 2018-10-22: MySQL dump file (v5.7) containing the 'gtdb_bacteria' database for GTDB release 02-RS83 for use with AnnoTree. Functional annotations include Pfam (v27) and KEGG Ontology (from the UniRef100 database downloaded March 6, 2018). Corresponds to AnnoTree version 1.0.0 before the integration of Archaea.

More information

• DOI: 10.5281/zenodo.2555457

Dates

• Publication date: 2018
• Issued: October 22, 2018

Rights

• https://creativecommons.org/licenses/by-sa/4.0/legalcode Creative Commons Attribution Share Alike 4.0 International
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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