Title: Bond Graph Modelling of Chemiosmotic Biomolecular Energy Transduction

Type Software Peter Gawthrop (2016): Bond Graph Modelling of Chemiosmotic Biomolecular Energy Transduction. Zenodo. Software. https://zenodo.org/record/166046

Author: Peter Gawthrop (University of Melbourne) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

Virtual Reference Environment (VRE) for the project: Bond Graph Modelling of Chemiosmotic Biomolecular Energy Transduction The corresponding publication is at https://arxiv.org/a/gawthrop_p_1.html

The file vre.iso is a bootable iso image. This can be used to boot a virtual machine such as virtualbox. Double-click the icon 'run_experiments.sh' and select 'Execute in Terminal' to reproduce the results of the paper. The results appear in Examples/vre_out.pdf

The file vre_out.pdf is the expected VRE output.

mtt and xmtt are made available by typing: source ~/Examples/mtt/bin/mttrc ~/Examples/mtt Type 'mtt --versions' to check. Type 'mtt' for more information Type 'mtt manual' for too much information Type 'xmtt&' for a GUI to mtt

The file vre_examples.tgz contains the sources.

General bond graph information is at http://www.gawthrop.net/BondGraphs/

Virtual Reference Environments are described by: Daniel G. Hurley, David M. Budden, and Edmund J. Crampin. Virtual reference environments: a simple way to make research reproducible. Briefings in Bioinformatics, 2014. doi:10.1093/bib/bbu043.

More information

• DOI: 10.5281/zenodo.166046

Dates

• Publication date: 2016
• Issued: November 10, 2016

Rights

• https://creativecommons.org/licenses/by-nc/4.0/legalcode Creative Commons Attribution Non Commercial 4.0 International
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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