Title: Liftover of Drosoophila melanogaster genotypes, DGRP sample, from dm3 to dm6 reference assembly.
Type Dataset Gilks, William P. (2016): Liftover of Drosoophila melanogaster genotypes, DGRP sample, from dm3 to dm6 reference assembly.. Zenodo. Dataset. https://zenodo.org/record/155396
Links
- Item record in Zenodo
- Digital object URL
Summary
Genotype data for Drosophila melanogaster DGRP collection. Variant positions relative to reference genome version dm6. Variant identifiers are in NCBI format. Processing code (including original data, reference sequences, perl scripts, etc).
The initial intention of performing this 'liftover' was to allow comparison with data from a different melanogaster sample which had been analysed against a dm6 reference assembly. At the time of writing I am not aware that a dataset like this one exists.
I've uploaded it in case it is useful to anyone in the future - and also as a trial of zenodo.
See README.txt and flylifter.sh for more info.
More information
- DOI: 10.5281/zenodo.155396
Subjects
- Drosophila melanogaster, D.melanogaster, SNP, bioinformatics, liftover, genomics, genome
Dates
- Publication date: 2016
- Issued: September 27, 2016
Rights
- https://creativecommons.org/licenses/by/4.0/legalcode Creative Commons Attribution 4.0 International
- info:eu-repo/semantics/openAccess Open Access
Funding Information
| Awardnumber | Awarduri | Funderidentifier | Funderidentifiertype | Fundername |
|---|---|---|---|---|
| 280632 | info:eu-repo/grantAgreement/EC/FP7/280632/ | 10.13039/100011102 | Crossref Funder ID | European Commission |
Format
electronic resource
Relateditems
| Description | Item type | Relationship | Uri |
|---|---|---|---|
| IsVersionOf | https://doi.org/10.5281/zenodo.649330 | ||
| IsPartOf | https://zenodo.org/communities/drosophila | ||
| IsPartOf | https://zenodo.org/communities/ecfunded | ||
| IsPartOf | https://zenodo.org/communities/william_gilks | ||
| IsPartOf | https://zenodo.org/communities/zenodo |