Title: 2.2

Type Software Mark Harris, John Owens, Ritesh Patel, aaldavid, Edmund Yan, zhangyaobit, Shubho Sengupta, Dan, ap1 (2014): 2.2. Zenodo. Software. https://zenodo.org/record/11548

Authors: Mark Harris (NVIDIA) ; John Owens (UC Davis) ; Ritesh Patel (UC Davis) ; aaldavid ; Edmund Yan ; zhangyaobit ; Shubho Sengupta ; Dan ; ap1 ;

Links

• Item record in Zenodo
• Digital object URL

Summary

Added cudppSuffixArray parallel skew algorithm for computing suffix array Replaced the cudppStringSort in burrowsWheelerTransform in cudppCompress with cudppSuffixArray to achieve better performance Fixed bugs in cudppMoveToFrontTransform where originally only inputs with values smaller than 15 work Fixed bugs to support cudppCompress to compress text containing all possible unsigned char values with the range of [1...255] Changed test files for cudppCompress and cudppMoveToFrontTransform to target the new BWT method Added -skiplargetests for MTF tests in order to avoid launch-timed-out errors Fixed bugs to make cudppStringSort compatible for gpu compute capability less than 2.0 Makefile fixes for OS X with clang compilation

More information

• DOI: 10.5281/zenodo.11548

Dates

• Publication date: 2014
• Issued: August 31, 2014

Rights

• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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