Title: VCF file of Variants in a wide onion cross segregating for bolting

Type Dataset Baldwin, Samantha, McCallum, John , Thomson, Susan, Pither-Joyce, Meeghan, Wright, Kathryn, Warren, Ben, Liu, Scout, Lee, Robyn, Macknight, Richard (2014): VCF file of Variants in a wide onion cross segregating for bolting. Zenodo. Dataset. https://zenodo.org/record/11455

Authors: Baldwin, Samantha (The New Zealand Institute for Plant & Food Research Limited) ; McCallum, John (The New Zealand Institute for Plant & Food Research Limited) ; Thomson, Susan (The New Zealand Institute for Plant & Food Research Limited) ; Pither-Joyce, Meeghan (The New Zealand Institute for Plant & Food Research Limited) ; Wright, Kathryn (The New Zealand Institute for Plant & Food Research Limited) ; Warren, Ben (The New Zealand Institute for Plant & Food Research Limited) ; Liu, Scout (The New Zealand Institute for Plant & Food Research Limited) ; Lee, Robyn (University of Otago) ; Macknight, Richard (University of Otago) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

VCF (variant call format) file of variants from bulked segregant RNA PoolSeq (BSR-seq) of F2 progeny pools of a wide onion cross segregating for bolting (precocious flowering). The reference assembly is GBGJ00000000.1 http://www.ncbi.nlm.nih.gov/nuccore/656904698

The pools were taken from materials sampled for validation of the AcBlt1 locus as described in http://www.ncbi.nlm.nih.gov/pubmed/24247236

Pools were from bolting or non-bolting plants homozygous at the most closely linked marker to AcBlt1  either for the bolt-associated genotype (AA) or the non-bolt genotype (BB). 

More information

• DOI: 10.5281/zenodo.11455

Subjects

• vcf , onion , SNP , genomics

Dates

• Publication date: 2014
• Issued: August 25, 2014

Rights

• https://creativecommons.org/publicdomain/zero/1.0/legalcode Creative Commons Zero v1.0 Universal
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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