Title: Data from "Corset: enabling differential gene expression analysis for de novo assembled transcriptomes"

Type Dataset Davidson, Nadia, Oshlack, Alicia (2014): Data from "Corset: enabling differential gene expression analysis for de novo assembled transcriptomes". Zenodo. Dataset. https://zenodo.org/record/11134

Authors: Davidson, Nadia (Murdoch Childrens Research Institute, Parkville, Australia) ; Oshlack, Alicia (Murdoch Childrens Research Institute, Parkville, Australia) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

This dataset contains de novo transcriptome assemblies for three publicly available RNA-seq dataset (SRA055442, SRR453566-SRR453571 and GSE37704 ). For each assembly we also provide a table with the read counts per contig, the output from corset (clusters and counts), and the results from a genome-based analysis. This dataset was used to assess the performance of the corset software. More detail is provided in the paper: Nadia M Davidson and Alicia Oshlack, Corset: enabling differential gene expression analysis for de novo assembled transcriptomes, Genome Biology 2014, 15:410. http://genomebiology.com/2014/15/7/410/abstract

More information

• DOI: 10.5281/zenodo.11134

Subjects

• de novo transcriptome assembly, RNA-seq

Dates

• Publication date: 2014
• Issued: August 03, 2014

Rights

• https://creativecommons.org/publicdomain/zero/1.0/legalcode Creative Commons Zero v1.0 Universal
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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