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Title: Database updates

Type Software David LeBauer, Rob Kooper, Michael Dietze, Betsy Cowdery, hardimanb, Shawn P. Serbin, jam2767, apourmok, TonyCohen, jingxia, andrewshirk, mtmarsh2, Jeremy Kemball, Brett Raczka, Xiaohui Feng (Sunny), hmb1 (2014): Database updates. Zenodo. Software. https://zenodo.org/record/10647

Authors: David LeBauer (University of Illinois) ; Rob Kooper (NCSA) ; Michael Dietze (Boston University) ; Betsy Cowdery ; hardimanb ; Shawn P. Serbin (Brookhaven National Laboratory) ; jam2767 ; apourmok ; TonyCohen ; jingxia ; andrewshirk ; mtmarsh2 ; Jeremy Kemball ; Brett Raczka ; Xiaohui Feng (Sunny) (University of Illinois) ; hmb1 ;

Links

Summary

This version focuses on more database updates. There are some changes to the BETY database. You can either update the database or download a new copy of the database. For specific notes on tasks to perform when upgrading see: https://github.com/PecanProject/pecan/wiki/Upgrading-pecan-vm

BETY Models: in the database there is now a link from a model to the dbfiles table. This allows you to have a single model, with binaries located in different places on different systems. BETY Pfts: each PFT now stores the model type associated with it, the web application will use this to find the right pfts to display for the user, and read.settings will check to see if the PFT is compatible with the model. pecan.xml: in pecan.xml the database section now has 2 subsections, bety and fia. Any existing information that was in the database section in pecan.xml will need to be moved to the bety subsection, read.settings() will automatically update your pecan.xml to reflect this. the <bety><write> option in the pecan.xml is now part of the <database><bety> section, read.settings() will automatically update your pecan.xml to reflect this. the ED land use/soil/vegetation/thermal sums data files are now inputs in BETY that need to be specified as inputs. PEcAn Web App config.php now declares the fully qualified host name ($fqdn) the config.php in pecan/web will have new database configuration parameters, please see config.example.php. no longer needed to specify vet/soil/ed_inputs in config.php, these are now stored as inputs in BETY. if the fia database is specified in config.php, the user can now select fia2ed from psscss selector.

More information

  • DOI: 10.5281/zenodo.10647

Dates

  • Publication date: 2014
  • Issued: June 25, 2014

Rights

  • info:eu-repo/semantics/openAccess Open Access

Much of the data past this point we don't have good examples of yet. Please share in #rdi slack if you have good examples for anything that appears below. Thanks!

Format

electronic resource

Relateditems

DescriptionItem typeRelationshipUri
IsSupplementTohttps://github.com/PecanProject/pecan/tree/v1.3.6
IsPartOfhttps://zenodo.org/communities/zenodo