Title: Chanjo - Coverage analysis for clincal sequencing

Type Software Robin Andeer (2014): Chanjo - Coverage analysis for clincal sequencing. Zenodo. Software. https://zenodo.org/record/10506

Author: Robin Andeer (Karolinska Institutet) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

Chanjo breaks down coverage to intuitive levels of abstraction; genes, transcripts, exons, and intervals. It also introduces a new coverage metric that reduces the bias from uneven coverage. Chanjo is built around the idea of multiple levels of pipelines and fully embraces UNIX conventions. It’s easily incorporated into existing pipelines and provides a clear path for downstream analysis.

More information

• DOI: 10.5281/zenodo.10506

Subjects

• coverage, clinical sequencing, dna, python

Dates

• Publication date: 2014
• Issued: June 16, 2014

Rights

• https://opensource.org/licenses/MIT MIT License
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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