Title: Training data of protein classifier SolubEcoli.pgc and GDP1.pgc

Type Dataset Das Roy, Rishi, Chakraborty, Kausik, Dash, Debasis, Bhardwaj, Manju, Bhatnagar, Vasudha (2014): Training data of protein classifier SolubEcoli.pgc and GDP1.pgc. Zenodo. Dataset. https://zenodo.org/record/10442

Authors: Das Roy, Rishi (GNR Knowledge Centre for Genome Informatics, Institute of Genomics and Integrative Biology, India/University of Pune) ; Chakraborty, Kausik (GNR Knowledge Centre for Genome Informatics, Institute of Genomics and Integrative Biology ) ; Dash, Debasis (GNR Knowledge Centre for Genome Informatics, Institute of Genomics and Integrative Biology, India/University of Pune) ; Bhardwaj, Manju (Maitreyi College, India) ; Bhatnagar, Vasudha (University of Delhi, India) ;

Links

• Item record in Zenodo
• Digital object URL

Summary

The classifiers Solub.Ecoli.pgc and GDP1.pgc have been built using Pro-Gyan (https://code.google.com/p/pro-gyan/).

The file AGGREGATING.fasta contains chaperone-dependent 502 aggregation prone proteins from E.coli. The file SOLUBLE.fasta contains chaperone-independent 475 soluble proteins from E.coli. The file GROEL_C3.fasta contains GroEL-dependent 83 "class 3" proteins from E.coli. The file SOLUBLE.fasta contains chaperone-independent 475 soluble proteins from E.coli.

More information

• DOI: 10.5281/zenodo.10442

Subjects

• eubacteria, aggregarion, protein, proteome

Dates

• Publication date: 2014
• Issued: June 11, 2014

Rights

• https://creativecommons.org/publicdomain/zero/1.0/legalcode Creative Commons Zero v1.0 Universal
• info:eu-repo/semantics/openAccess Open Access

Format

electronic resource

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