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Title: CoNet

Type Software Faust, Karoline, Raes, Jeroen (2014): CoNet. Zenodo. Software. https://zenodo.org/record/10382

Authors: Faust, Karoline (1Center for the Biology of Disease, Vlaams Instituut voor Biotechnologie (VIB), Belgium 2Department of Applied Biological Sciences, Vrije Universiteit Brussel (VUB), 1050, Brussels) ; Raes, Jeroen (1Center for the Biology of Disease, Vlaams Instituut voor Biotechnologie (VIB), Belgium 2Department of Applied Biological Sciences, Vrije Universiteit Brussel (VUB), 1050, Brussels, Belgium. 3Department of Microbiology and Immunology, REGA Institute, Katholieke Universiteit (KU) Leuven, 3000, Leuven, Belgium.) ;

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Summary

CoNet is a Cytoscape plugin that detects significant non-random patterns of co-occurrence (copresence and mutual exclusion) in incidence and abundance data. It has been designed with (microbial) ecological data in mind, but can be applied in general to infer relationships between objects observed in different samples (for example between genes present or absent across organisms).

More information

  • DOI: 10.5281/zenodo.10382

Subjects

  • CoNet, Cytoscape

Dates

  • Publication date: 2014
  • Issued: June 05, 2014

Notes

Other: Please be aware that this code is not being actively developed, as it is an archive of the code as it was at the time of publication in the associated F1000Research article. For the latest version of this code, please see http://sourceforge.net/projects/conet/

Rights

Much of the data past this point we don't have good examples of yet. Please share in #rdi slack if you have good examples for anything that appears below. Thanks!

Format

electronic resource

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