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Title: Pooled sequencing data of field-collected Eurytemora affinis copepods from nine locations in North America collected October 2012 to March 2014

Type Dataset Stern, David B., Lee, Carol E. (2022-11-14): Pooled sequencing data of field-collected Eurytemora affinis copepods from nine locations in North America collected October 2012 to March 2014. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu. Dataset. https://darchive.mblwhoilibrary.org/handle/1912/29502

Authors: Stern, David B. ; Lee, Carol E. ;

Links

Summary

This dataset consists of pooled whole-genome sequencing data (Pool-seq) of Eurytemora affinis complex copepods collected from nine locations across North America. Each sample consists of 100 pooled individuals with an approximate 1:1 sex ratio, sequenced using the Nextera DNA library preparation kit and Illumina HiSeq platform. Population sampling targeted nine wild populations of the E. affinis complex from two genetically distinct lineages (the Gulf and Atlantic clades) including both native saline and invaded freshwater locations. The data were generated to investigate evolutionary genomic factors underlying successful invasion of freshwater habitats and were collected by Drs. Martin Bontrager, David B. Stern, and Carol E. Lee of the University of Wisconsin-Madison. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883227

More information

  • URI: https://hdl.handle.net/1912/29502
  • DOI: 10.26008/1912/bco-dmo.883227.1
  • Language: en_US

Subjects

  • genomics, salinity adaptation, Marine invasion, selection

Dates

  • accessioned: November 14, 2022
  • available: November 14, 2022
  • created: November 12, 2022
  • Publication date: November 14, 2022
  • coverage: Note: 20121014 - 20140321 (UTC)

Notes

Dataset: Pooled sequencing data from field-collected Eurytemora affinis

Rights

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Funding Information

AwardnumberAwarduriFunderidentifierFunderidentifiertypeFundername
NSF Division of Ocean Sciences (NSF OCE) OCE-1658517

Format

electronic resource

Locations

KindValueGeopoint
St. Lawrence estuary, Gulf of Mexico, Great Lakes, Baltic Sea
westlimit: -96.797; southlimit: 29.254; eastlimit: -69.423; northlimit: 48.002

Relateditems

DescriptionItem typeRelationshipUri
Not specifiedhttp://lod.bco-dmo.org/id/dataset/883227
Not specifiedhttps://doi.org/10.26008/1912/bco-dmo.883227.1