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Title: NCBI accession numbers for RNAseq data from five coral species experimentally exposed to Stony Coral Tissue Loss Disease (SCTLD) at the University of the Virgin Islands in 2019

Type Dataset Mydlarz, Laura (2022-10-05): NCBI accession numbers for RNAseq data from five coral species experimentally exposed to Stony Coral Tissue Loss Disease (SCTLD) at the University of the Virgin Islands in 2019. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu. Dataset. https://darchive.mblwhoilibrary.org/handle/1912/29387

Author: Mydlarz, Laura ;

Links

Summary

Raw RNA sequence data were obtained from a disease transmission experiment carried out at the University of the Virgin Islands in which five reef-building coral species, Colpophyllia natans, Orbicella annularis, Pseudodiploria strigosa, Porites astreoides, and Montastraea cavernosa, were exposed to Stony Coral Tissue Loss Disease (SCTLD) in mesocosms. Sequences were used to compare the differential expression of host and endosymbiont genes between disease states (control, disease-exposed, and disease-infected) and to elucidate a transcriptomic model of the holobiont response to SCTLD. This dataset includes National Center for Biotechnology Information (NCBI) accession numbers and related data for those five coral species examined in the experiment. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/881776

More information

  • URI: https://hdl.handle.net/1912/29387
  • DOI: 10.26008/1912/bco-dmo.881776.1
  • Language: en_US

Subjects

  • RNAseq, SCTLD, Immunity, Disease, Stony coral tissue loss disease

Dates

  • accessioned: October 05, 2022
  • available: October 05, 2022
  • created: September 30, 2022
  • Publication date: October 05, 2022
  • coverage: Note: 20190317 - 20190412 (UTC)

Notes

Dataset: NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD

Rights

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Funding Information

AwardnumberAwarduriFunderidentifierFunderidentifiertypeFundername
NSF Division of Ocean Sciences (NSF OCE) OCE-1928771

Format

electronic resource

Locations

KindValueGeopoint
St. Thomas, U.S. Virgin Islands
westlimit: -64.926; southlimit: 18.3277; eastlimit: -64.926; northlimit: 18.3277

Relateditems

DescriptionItem typeRelationshipUri
Not specifiedhttp://lod.bco-dmo.org/id/dataset/881776
Not specifiedhttps://doi.org/10.26008/1912/bco-dmo.881776.1