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Title: Pool-seq data from laboratory selection lines of copepods collected from Kiel Canal in Germany in 2017 and 2018

Type Dataset Lee, Carol E., Stern, David B. (2022-09-08): Pool-seq data from laboratory selection lines of copepods collected from Kiel Canal in Germany in 2017 and 2018. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu. Dataset. https://darchive.mblwhoilibrary.org/handle/1912/29322

Authors: Lee, Carol E. ; Stern, David B. ;

Links

Summary

This dataset represents pool-seq data from laboratory selection lines of E. affinis collected from Kiel Canal in Kiel, Germany (latitude = 54° 19' 59.88"N, longitude = 10° 9' 0"W) in 2017 (approximately 1000 copepods) and on May 30, 2018 (85 gravid females and 40 juveniles). Individual copepods (ranging from 50 to 200 in number) were pooled and their DNA was extracted. Paired-end whole-genome sequencing libraries were prepared using the Illumina Nextera DNA kit (Illumina, Inc.) and sequenced on five lanes of an Illumina HiSeq 4000 sequencer, generating an average of approximately 176 million paired-end (100 bp) reads per pool. These data have been deposited in NCBI under BioProject number PRJNA844002. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/878335

More information

  • URI: https://hdl.handle.net/1912/29322
  • DOI: 10.26008/1912/bco-dmo.878335.1
  • Language: en_US

Subjects

  • Epistasis, Parallel evolution, Evolve, Resequence

Dates

  • accessioned: September 08, 2022
  • available: September 08, 2022
  • created: August 29, 2022
  • Publication date: September 08, 2022
  • coverage: Note: 20190101 - 20191231 (UTC)

Notes

Dataset: Evolve and re-sequence experiment - laboratory selection lines

Rights

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Funding Information

AwardnumberAwarduriFunderidentifierFunderidentifiertypeFundername
NSF Division of Ocean Sciences (NSF OCE) OCE-1658517

Format

electronic resource

Locations

KindValueGeopoint
St. Lawrence estuary, Gulf of Mexico, Great Lakes, Baltic Sea
westlimit: 10.15; southlimit: 54.3333; eastlimit: 10.15; northlimit: 54.3333

Relateditems

DescriptionItem typeRelationshipUri
Not specifiedhttp://lod.bco-dmo.org/id/dataset/878335
Not specifiedhttps://doi.org/10.26008/1912/bco-dmo.878335.1