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Title: NCBI project accession and library information on each sample analyzed in upwelling experiments conducted on two phytoplankton species isolated from the California Upwelling Zone

Type Dataset Marchetti, Adrian (2021-03-17): NCBI project accession and library information on each sample analyzed in upwelling experiments conducted on two phytoplankton species isolated from the California Upwelling Zone. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu. Dataset. https://darchive.mblwhoilibrary.org/handle/1912/26825

Author: Marchetti, Adrian ;

Links

Summary

Two phytoplankton species, isolated from the California Upwelling Zone - Chaetoceros deicipiens (UNC1416) and Emiliania Huxleyi (UNC1419) - were cultured at 12 degrees Celsius in artificial Aquil* medium using trace metal clean (TMC) techniques. Upwelling conveyor belt cycle (UCBC) simulations were performed by transitioning the cultures to different nutrient and light regimes. RNA transcriptome libraries were created using the Illumina TruSeq Stranded mRNA Library Preparation Kit for C. dicipiens, and the KAPA stranded mRNA-Seq kit for Illumina platforms for E. huxleyi. Samples were sequenced on an Illumina MiSeq. This dataset includes the NCBI project accession and library information on each sample analyzed in the upwelling experiments. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/826494

More information

  • URI: https://hdl.handle.net/1912/26825
  • DOI: 10.26008/1912/bco-dmo.826494.1
  • Language: en_US

Dates

  • accessioned: March 17, 2021
  • available: March 17, 2021
  • created: March 17, 2021
  • Publication date: March 17, 2021
  • coverage: Note: 20170101 - 20170930 (UTC)

Notes

Dataset: Sample Accession Numbers

Rights

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Funding Information

AwardnumberAwarduriFunderidentifierFunderidentifiertypeFundername
NSF Division of Ocean Sciences (NSF OCE) OCE-1751805

Format

electronic resource

Locations

KindValueGeopoint
California Upwelling Zone

Relateditems

DescriptionItem typeRelationshipUri
Not specifiedhttp://lod.bco-dmo.org/id/dataset/826494
Not specifiedhttps://doi.org/10.26008/1912/bco-dmo.826494.1