Title: Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014

Type Dataset Caron, David, Hu, Sarah K (2020-05-06): Operational taxonomic unit (OTU) table for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014. Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu. Dataset. https://darchive.mblwhoilibrary.org/handle/1912/25752

Authors: Caron, David ; Hu, Sarah K ;

Links

• Item record in Woods Hole Open Access Server
• Digital object URL

Summary

This dataset is a raw output operational taxonomic unit (OTU) table generated by processing and clustering raw 18S rRNA gene tag sequences from extracted DNA and RNA. Columns represent samples, including month sampled, material (either extracted RNA or DNA), and depth (in meters); thus values in each column represent the number of sequences in that sample that belong to a given OTU (OTUs by row). Each row represents a single OTU. The last column lists the taxonomic identifier assigned to each OTU. The raw sequence data can be found in the NCBI SRA database under accession number SRP070577 with the associated BioProject PRJNA311248. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/748064

More information

• URI: https://hdl.handle.net/1912/25752
• DOI: 10.26008/1912/bco-dmo.748064.1
• Language: en_US

Dates

• accessioned: May 06, 2020
• available: May 06, 2020
• created: October 15, 2018
• Publication date: May 06, 2020
• coverage: Note: 20130424 - 20140115 (UTC)

Notes

Rights

• Creative Commons Attribution 4.0
• https://creativecommons.org/licenses/by/4.0/

Funding Information

Format

electronic resource

Locations

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